R users group

Center for Human and Clinical Genetics,
Leiden University Medical Center



Script for using the GSEA gene sets in globaltest - October 23rd 2006
Owner : Henk Buermans
Subject : Script for using the geneset enrichment analysis gene sets in globaltest
Files : R script
Data file

Meeting June 6th 2006
Speaker : Judith Boer
Subject : Ssize package for microarray sample size determination
Files : Presentation
R script
Standard deviations input file

Meeting March 14th 2006
Speaker : Peter Svensson
Subject : Quality control of Affymetrix arrays
Files : Presentation

Meeting February 7th 2006
Speaker : Renée de Menezes
Subject : Some useful graphical tools in R
Files : Presentation
Examples
Speaker : Paola Pedotti
Subject : Nice and Easy Graphs with the Scattersmooth Package
Files : Presentation
Examples

Meeting January 3rd 2006
Speaker : Judith Boer
Subject : AnnBuilder annotation package and test in Global Test
Files : AnnBuilder annotated script
GlobalTest annotated script

Meeting December 6th 2005
Speaker : Jan Oosting
Subject : Pathway analysis using BioConductor: The global test revisited
Files : Presentation
Examples (70.7 Mb ZIPfile)

Meeting June 21st 2005
Speaker : Judith Boer
Subject : Limma: Linear models for microarray data
Files : Presentation
Basic concepts in regression models (Renee de Menezes)
Examples

Meeting May 3rd 2005
Speaker : Peter Svensson
Subject : Working with enriched gene sets in R
Files : Presentation
Examples

Meeting April 5th 2005
Speaker : Anja Schiel
Subject : Quality Control
Files : Presentation
Examples

Time: 12.30-13.30
Locations:
P0-112: Pathology, LUMC main building, ground floor (between P and L entrances)
Albinusdreef 2,
2333 ZA Leiden
Route description: www.humgen.nl/where.php